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Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Pseudoroegneria spicata, Triticum monococcum, Triticum turgidum subsp. durum, Brachypodium distachyon, Triticum aestivum



ABOUT THIS RECORD

ID: MNEST003852
species: Oryza sativa
miRNA family: MIR819
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCAGGTTATAAGACTTTCTAT

miRNA*
 AGAAAGTCTTATAATACAAG

mismatches: 3
bulges: 1
View larger
pre-miRNA
 TGTATTCGTCATATTTATTACTACCTCTATTTCAGGTTATAAGACTTTCTATCTTGCCTACATTTATATAGATGTTAAATAATTTAGGCACATATATGTC
TAGATTCATTAACATATATATGAATGTGGGCATGCTAGAAAGTCTTATAATACAAGCGGAGGAAGTATTTATTTAAAAAATCAT

dot-bracket secondary structure
...........((..((.((((.(((((.(((...((((((((((((((((...((((((((((((((((.(((((((..((((((((((......))))
))))))..))))))).))))))))))))))))...))))))))))))))))..))).))))).))))..))..)).........


SIMILARITIES
miRBase osa-MIR819j: 2e-40

PMRD osa-miR819j: 2e-40

microPC miR819: 7e-22		UniProt no hits

RFAM MIR1122: 6e-26		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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